LIGSITEcsc is a web server for the automatic identification of pockets on
protein surface using the Connolly surface and the degree of conservation!
- A user may upload his/her own pdbfile
- A user may enter a PDB code and chain ID
- A user may adjust the parameters
Want to run LIGSITEcsc locally?
Get the source code here.
It will take up to 30 seconds to find pockets depending on the size of your protein and the parameters you set.
Please be patient.
The algorithm of LIGSITEcsc is illustrated here.
We have developed a new web-server called metaPocket.
Please visit it for more accurate ligand binding site prediction.
If you find this server useful for your work, please cite: Bingding
Huang and Michael Schroeder (2006),
LIGSITEcsc: predicting protein binding sites using
the Connolly surface and degree of conservation, BMC structural
Biology, 6:19. ( link pdf )
Bingding Huang, e-mail: firstname.lastname@example.org,
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Last update: 10th, June, 2007